Index

_ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

__init__() (astrocook.core.session.SessionV2 method) (astrocook.core.spectrum.SpectrumV2 method) (astrocook.core.spectrum.TableAdapterV2 method) (astrocook.core.structures.ComponentDataV2 method) (astrocook.core.structures.DataColumnV2 method) (astrocook.core.structures.HistoryLogV2 method) (astrocook.core.structures.LogEntryV2 method) (astrocook.core.structures.ParameterConstraintV2 method) (astrocook.core.structures.SessionMetadataV2 method) (astrocook.core.structures.SpectrumDataV2 method) (astrocook.core.structures.SystemListDataV2 method) (astrocook.core.structures.V1LogArtifact method) (astrocook.core.system_list.SystemListV2 method) (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method) (astrocook.fitting.voigt_fitter.VoigtFitterV2 method) (astrocook.fitting.voigt_model.VoigtModelConstraintV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) (astrocook.recipes.continuum.RecipeContinuumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) (astrocook.recipes.file.RecipeFileV2 method) (astrocook.recipes.flux.RecipeFluxV2 method)

A

absorbers (astrocook.core.session.SessionV2 attribute) add_component() (astrocook.core.system_list.SystemListV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) add_components_from_regions() (astrocook.core.system_list.SystemListV2 method) add_entry() (astrocook.core.structures.HistoryLogV2 method) add_linked_system() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) apply_expression() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) apply_results() (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method) are_overlapping() (in module astrocook.core.system_list) astrocook.core module astrocook.core.session module astrocook.core.spectrum module astrocook.core.structures module astrocook.core.system_list module

astrocook.fitting module astrocook.fitting.bayesian_fitter module astrocook.fitting.voigt_fitter module astrocook.fitting.voigt_model module astrocook.recipes module astrocook.recipes.absorbers module astrocook.recipes.continuum module astrocook.recipes.edit module astrocook.recipes.file module astrocook.recipes.flux module aux_cols (astrocook.core.structures.SpectrumDataV2 attribute)

B

b (astrocook.core.structures.ComponentDataV2 attribute)

BayesianVoigtFitter (class in astrocook.fitting.bayesian_fitter) btur (astrocook.core.structures.ComponentDataV2 attribute)

C

calc_intersection_expression() (astrocook.core.spectrum.SpectrumV2 method) calculate_running_std() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.flux.RecipeFluxV2 method) calibrate() (astrocook.core.spectrum.SpectrumV2 method) calibrate_from_magnitudes() (astrocook.recipes.flux.RecipeFluxV2 method) chi2 (astrocook.core.structures.ComponentDataV2 attribute) clean_negligible() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) coadd() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) component_uuids (astrocook.core.structures.SessionMetadataV2 attribute)

ComponentDataV2 (class in astrocook.core.structures) components (astrocook.core.structures.SystemListDataV2 attribute) (astrocook.core.system_list.SystemListV2 property) components_auto() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) compute_model_flux() (astrocook.fitting.voigt_fitter.VoigtFitterV2 method) constraint_status (astrocook.core.system_list.SystemListV2 property) constraints_by_uuid (astrocook.core.structures.SessionMetadataV2 attribute) cont (astrocook.core.spectrum.SpectrumV2 property) continuum (astrocook.core.session.SessionV2 attribute) convolve_flux() (in module astrocook.fitting.voigt_fitter) current_index (astrocook.core.structures.HistoryLogV2 attribute)

D

DataColumnV2 (class in astrocook.core.structures) db (astrocook.core.structures.ComponentDataV2 attribute) dbtur (astrocook.core.structures.ComponentDataV2 attribute) DEFAULT_BOUNDS (astrocook.fitting.voigt_model.VoigtModelConstraintV2 attribute) delete() (astrocook.recipes.edit.RecipeEditV2 method) delete_component() (astrocook.core.system_list.SystemListV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) description (astrocook.core.structures.DataColumnV2 attribute)

detect_absorptions() (astrocook.core.spectrum.SpectrumV2 method) detect_anchor() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) detect_doublet_z() (astrocook.core.spectrum.SpectrumV2 method) dlogN (astrocook.core.structures.ComponentDataV2 attribute) doublets_auto() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) dy (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.structures.SpectrumDataV2 attribute) dz (astrocook.core.structures.ComponentDataV2 attribute)

E

edit (astrocook.core.session.SessionV2 attribute) entries (astrocook.core.structures.HistoryLogV2 attribute) equalize() (astrocook.recipes.flux.RecipeFluxV2 method) equalize_and_stitch() (astrocook.recipes.edit.RecipeEditV2 method)

equalize_to_reference() (astrocook.core.spectrum.SpectrumV2 method) estimate_auto() (astrocook.recipes.continuum.RecipeContinuumV2 method) export_ascii() (astrocook.recipes.file.RecipeFileV2 method) expression (astrocook.core.structures.ParameterConstraintV2 attribute) extract_preset() (astrocook.recipes.edit.RecipeEditV2 method)

F

file (astrocook.core.session.SessionV2 attribute) filter_by_criteria() (astrocook.core.system_list.SystemListV2 method) filter_by_range() (astrocook.core.system_list.SystemListV2 method) find_absorbed() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.continuum.RecipeContinuumV2 method) fit() (astrocook.fitting.voigt_fitter.VoigtFitterV2 method) fit_bayesian() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) fit_component() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method)

fit_continuum() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.continuum.RecipeContinuumV2 method) fit_powerlaw() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.continuum.RecipeContinuumV2 method) fitting_context() (astrocook.core.system_list.SystemListV2 method) flux (astrocook.core.session.SessionV2 attribute) forest_auto() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) from_flat_data() (astrocook.core.structures.SpectrumDataV2 class method) func (astrocook.core.structures.ComponentDataV2 attribute)

G

get_active_param_labels() (astrocook.fitting.voigt_model.VoigtModelConstraintV2 method) get_all_w_rest() (in module astrocook.core.system_list) get_bounds() (astrocook.fitting.voigt_model.VoigtModelConstraintV2 method) get_column() (astrocook.core.spectrum.SpectrumV2 method) get_component_by_uuid() (astrocook.core.system_list.SystemListV2 method)

get_connected_group() (astrocook.core.system_list.SystemListV2 method) get_fit_context_data() (astrocook.fitting.voigt_fitter.VoigtFitterV2 method) get_region_bounds() (astrocook.core.spectrum.SpectrumV2 method) get_resampled_column() (astrocook.core.spectrum.SpectrumV2 method) get_velocity_bounds() (astrocook.core.spectrum.SpectrumV2 method)

H

has_aux_column() (astrocook.core.spectrum.SpectrumV2 method)

HistoryLogV2 (class in astrocook.core.structures)

I

id (astrocook.core.structures.ComponentDataV2 attribute) (astrocook.core.system_list.SystemListV2 property) identify_lines() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method)

import_ascii() (astrocook.recipes.file.RecipeFileV2 method) import_systems() (astrocook.recipes.edit.RecipeEditV2 method) is_free (astrocook.core.structures.ParameterConstraintV2 attribute) is_v2_log (astrocook.core.structures.HistoryLogV2 property) (astrocook.core.structures.V1LogArtifact property)

L

lines (astrocook.core.session.SessionV2 property) ln_likelihood() (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method) ln_posterior() (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method) ln_prior() (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method) load_session_from_file() (in module astrocook.core.session)

log_history_json (astrocook.core.structures.SessionMetadataV2 attribute) log_type (astrocook.core.structures.SessionMetadataV2 attribute) LogEntryV2 (class in astrocook.core.structures) logN (astrocook.core.structures.ComponentDataV2 attribute) lya_auto() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method)

M

map_p_free_to_full() (astrocook.fitting.voigt_model.VoigtModelConstraintV2 method) mask_expression() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) mask_region() (astrocook.core.spectrum.SpectrumV2 method) merge() (astrocook.core.system_list.SystemListV2 method) merge_column() (astrocook.core.spectrum.SpectrumV2 method) meta (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.structures.SpectrumDataV2 attribute) (astrocook.core.structures.SystemListDataV2 attribute) metals_auto() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) model (astrocook.core.spectrum.SpectrumV2 property) module astrocook.core astrocook.core.session astrocook.core.spectrum astrocook.core.structures astrocook.core.system_list astrocook.fitting astrocook.fitting.bayesian_fitter astrocook.fitting.voigt_fitter astrocook.fitting.voigt_model astrocook.recipes astrocook.recipes.absorbers astrocook.recipes.continuum astrocook.recipes.edit astrocook.recipes.file astrocook.recipes.flux

N

name (astrocook.core.session.SessionV2 attribute)

norm (astrocook.core.spectrum.SpectrumV2 property)

O

open_new() (astrocook.core.session.SessionV2 class method)

optimize_hierarchy() (astrocook.core.system_list.SystemListV2 method) optimize_system() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method)

P

p_free_vector (astrocook.fitting.voigt_model.VoigtModelConstraintV2 property) PARAMETER_ORDER (astrocook.fitting.voigt_model.VoigtModelConstraintV2 attribute) ParameterConstraintV2 (class in astrocook.core.structures) params (astrocook.core.structures.LogEntryV2 attribute)

parsed_constraints (astrocook.core.structures.SystemListDataV2 attribute) (astrocook.core.system_list.SystemListV2 property) populate_from_identification() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) prepare_expression_context() (astrocook.core.spectrum.SpectrumV2 method) prepare_fit_context() (astrocook.fitting.voigt_fitter.VoigtFitterV2 method)

Q

quantity (astrocook.core.structures.DataColumnV2 property)

R

rebin() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.flux.RecipeFluxV2 method) recipe_name (astrocook.core.structures.LogEntryV2 attribute) RecipeAbsorbersV2 (class in astrocook.recipes.absorbers) RecipeContinuumV2 (class in astrocook.recipes.continuum) RecipeEditV2 (class in astrocook.recipes.edit) RecipeFileV2 (class in astrocook.recipes.file) RecipeFluxV2 (class in astrocook.recipes.flux) redo() (astrocook.core.structures.HistoryLogV2 method)

refit_all() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) remove_columns() (astrocook.core.spectrum.SpectrumV2 method) remove_in_region() (astrocook.core.system_list.SystemListV2 method) remove_meta_keys() (astrocook.core.spectrum.SpectrumV2 method) resample() (astrocook.recipes.flux.RecipeFluxV2 method) resample_on_grid() (astrocook.core.spectrum.SpectrumV2 method) resol (astrocook.core.structures.ComponentDataV2 attribute) (astrocook.core.structures.SpectrumDataV2 attribute) run_mcmc() (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method) run_nested() (astrocook.fitting.bayesian_fitter.BayesianVoigtFitter method)

S

sanitize_legacy_tellurics() (astrocook.core.spectrum.SpectrumV2 method) save() (astrocook.core.session.SessionV2 method) scale_flux() (astrocook.core.spectrum.SpectrumV2 method) series (astrocook.core.structures.ComponentDataV2 attribute) (astrocook.core.system_list.SystemListV2 property) SessionMetadataV2 (class in astrocook.core.structures) SessionV2 (class in astrocook.core.session) set_active_components() (astrocook.fitting.voigt_model.VoigtModelConstraintV2 method) set_properties() (astrocook.recipes.edit.RecipeEditV2 method) smooth() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.flux.RecipeFluxV2 method)

smooth_column() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) spec (astrocook.core.session.SessionV2 property) SpectrumDataV2 (class in astrocook.core.structures) SpectrumV2 (class in astrocook.core.spectrum) split() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) stitch() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method) SystemListDataV2 (class in astrocook.core.structures) SystemListV2 (class in astrocook.core.system_list) systs (astrocook.core.session.SessionV2 attribute)

T

t (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.system_list.SystemListV2 property) TableAdapterV2 (class in astrocook.core.spectrum)

target_uuid (astrocook.core.structures.ParameterConstraintV2 attribute) to_v1_spectrum() (astrocook.core.spectrum.SpectrumV2 method) to_v1_systlist() (astrocook.core.system_list.SystemListV2 method) trim_common() (astrocook.recipes.edit.RecipeEditV2 method)

U

undo() (astrocook.core.structures.HistoryLogV2 method) unit (astrocook.core.structures.DataColumnV2 attribute) update_column() (astrocook.core.spectrum.SpectrumV2 method) update_component() (astrocook.core.system_list.SystemListV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) update_components() (astrocook.core.system_list.SystemListV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method)

update_constraint() (astrocook.core.system_list.SystemListV2 method) (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) update_constraints_column() (astrocook.recipes.absorbers.RecipeAbsorbersV2 method) update_continuum_from_knots() (astrocook.core.spectrum.SpectrumV2 method) update_from_knots() (astrocook.recipes.continuum.RecipeContinuumV2 method) update_model() (astrocook.core.spectrum.SpectrumV2 method) uuid (astrocook.core.structures.ComponentDataV2 attribute)

V

v1_header_constraints (astrocook.core.structures.SystemListDataV2 attribute) V1_ID_REGEX (astrocook.fitting.voigt_model.VoigtModelConstraintV2 attribute) v1_id_to_uuid_map (astrocook.core.structures.SystemListDataV2 attribute) v1_models_t (astrocook.core.structures.SystemListDataV2 attribute) (astrocook.core.system_list.SystemListV2 property) v1_reconstruction_data (astrocook.core.structures.SessionMetadataV2 attribute) v1_target_id (astrocook.core.structures.ParameterConstraintV2 attribute)

V1LogArtifact (class in astrocook.core.structures) v2_constraints_for_save (astrocook.core.system_list.SystemListV2 property) (astrocook.fitting.voigt_model.VoigtModelConstraintV2 property) v2_constraints_map (astrocook.core.structures.SystemListDataV2 attribute) value (astrocook.core.structures.DataColumnV2 property) values (astrocook.core.structures.DataColumnV2 attribute) VoigtFitterV2 (class in astrocook.fitting.voigt_fitter) VoigtModelConstraintV2 (class in astrocook.fitting.voigt_model)

W

with_new_spectrum() (astrocook.core.session.SessionV2 method)

with_new_system_list() (astrocook.core.session.SessionV2 method) with_properties() (astrocook.core.spectrum.SpectrumV2 method)

X

x (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.structures.SpectrumDataV2 attribute) x_convert() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method)

xmax (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.structures.SpectrumDataV2 attribute) xmin (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.structures.SpectrumDataV2 attribute)

Y

y (astrocook.core.spectrum.SpectrumV2 property) (astrocook.core.structures.SpectrumDataV2 attribute)

y_convert() (astrocook.core.spectrum.SpectrumV2 method) (astrocook.recipes.edit.RecipeEditV2 method)

Z

z (astrocook.core.structures.ComponentDataV2 attribute) (astrocook.core.system_list.SystemListV2 property)

z_em (astrocook.core.structures.SpectrumDataV2 attribute)